FunRich - Additional Features Request Form

Please request additional features that you think can be incorporated in FunRich.
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The FunRich team will prioritize the request based on demand (more users requested feature) and the feasibility.

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What additional features would you want from FunRich?

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Mac or linux compatitbility or web based FunRich version ( requested by 182 users)
Implement miRNA enrichment analysis ( requested by 95 users)
Venn diagram between Vesiclepedia and my dataset(s) ( requested by 91 users)
Generate heatmaps for input datasets ( requested by 90 users)
Compare more than two input datasets for enrichment analysis ( requested by 77 users)
Improved coverage of UniProt IDs ( requested by 68 users)
Download proteins/RNA identified exclusively in a subtype of extracellular vesicle ( requested by 68 users)
Download proteins/RNA identified in extracellular vesicles isolated from a specific sample ( requested by 65 users)
Real time database update ( requested by 63 users)
Download all proteins/RNA identified in a subtype of extracellular vesicle ( requested by 61 users)
Implement Gene Ontology enrichment and automatic download of database ( requested by 59 users)
Download top 100 proteins identified in extracellular vesicles ( requested by 58 users)
Enrichment of genes in different cancer types using COSMIC data ( requested by 56 users)
Ability to download the top hits (protein/ mRNA/ miRNA/ lipids) ( requested by 56 users)
Option to upload miRNA gene name or miRbase acession number ( requested by 52 users)
Option to customize the color of charts/graphs ( requested by 52 users)
Regular update of background databases ( requested by 51 users)
Heatmap of interested genes (not clustered) ( requested by 51 users)
Identify upregulated and downregulated proteins for specific biological process from heatmap data ( requested by 51 users)
Quantitative expression profile based enrichment analysis ( requested by 51 users)
Edit font of all charts/graphs ( requested by 49 users)
Upload data from an Excel sheet ( requested by 49 users)
Find targets for miRNA ( requested by 48 users)
Allow users to control the databases ( requested by 47 users)
Enrichment analysis using quantitative values ( requested by 46 users)
Implement quantitative Venn diagram of differentially expressed genes/proteins ( requested by 45 users)
Clustered heatmap ( requested by 44 users)
Ability to find the references of filtered dataset when comparing custom dataset with the filtered dataset from Vesiclepedia ( requested by 44 users)
Save workspace or session feature ( requested by 44 users)
Update Vesiclepedia data automatically ( requested by 43 users)
Ability to search for proteins that are being currently used. Especially important if you are looking for a protein / bunch of proteins amongst several hundreds in the list ( requested by 42 users)
Venn diagram of the Vesiclepedia would benefit from displaying distribution of the sample genes by EV subtypes ( requested by 42 users)
For each protein in the lists derived from Venn diagram report in which type of sample it was identified ( requested by 42 users)
Description of the Vesiclepedia section in the manual ( requested by 41 users)
Implement metabolomic enrichment analysis ( requested by 41 users)
Reflect the fragmentation status of the vesicular RNAs (fragmented vs. intact) ( requested by 40 users)
Option to choose more databases to use as background for heatmaps ( requested by 40 users)
Mapping and conversion of acession IDs to different databases ( requested by 39 users)
Protein-protein interaction for other species (non human) ( requested by 38 users)
Display graphs/charts in Excel sheet automatically ( requested by 38 users)
For each protein resulting shared using Venn diagram tool to specify type of experiment through which it was identified in exosomes and provide the link to PubMed references supporting its identification ( requested by 38 users)
"For each protein list from the Venn diagram, provide, if available, the link to its interactome" ( requested by 38 users)
Convert Gene Symbol to UniProt IDs ( requested by 37 users)
Implement Recatome pathway enrichment and automatic download of database ( requested by 37 users)
Suggestions for the manual: for a first-time user, a description of the input data (examples would suffice) would be necessary ( requested by 37 users)
Description or full name that can appear on mouse click or as a pop up window for terms/domains ( requested by 37 users)
Implement q value method (Storey and Tibshirani) ( requested by 36 users)
More cancer types under the cell lines tab ( requested by 34 users)
Under the tissue/cell types include CSF ( requested by 33 users)
Refer the nature or source of the interaction in interaction maps (text mining or experimental) ( requested by 33 users)
Find which miRNA will bind to my gene list ( requested by 32 users)
Include videos for custom database upload ( requested by 32 users)
"Set a default output option which allows to export a summary report including excel files, image files and a summary text" ( requested by 29 users)
Content types should also include other molecules including lncRNAs, piRNA, snoRNA or can be listed as other RNA molecules. ( requested by 27 users)

FunRich - Additional Features Request Form

What additional features would you want from FunRich?

1. Pick from current requested features

2. If not available, describe your feature(s) here