FunRich: Functional Enrichment analysis tool

FunRich is a stand-alone software tool used mainly for functional enrichment and interaction network analysis of genes and proteins. Besides, the results of the analysis can be depicted graphically in the form of Venn, Bar, Column, Pie and Doughnut charts. Currently, FunRich tool is designed to handle variety of gene/protein data sets irrespective of the organism. Users can not only search against default background database, but can also load customized database against which functional enrichment analysis can be carried out.  

FunRich
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PPI modules
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Snapshot of FunRich images
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Heatmap
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Interaction network planetary layout
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Venn diagram
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Interaction network circular layout
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Column graph
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Interaction network square layout
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Doughnut graph comparing two datasets
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Interaction network packed layout
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FunRich
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Bar graph
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FunRich

Overall, FunRich tool hosts three different database options against which analysis can be done. In FunRich, users are provided with three options to manage the backend databases:

  1. a human only database is provided and the assembly details are clearly provided both in the manuscript and in the FAQs sections of the website;
  2. the users can automatically download database from UniProt for any organism
  3. the users can build their own databases and perform the enrichment analyses directly with FunRich. Thus FunRich allows for complete database customization and thereby allows for the tool to be exploited as a skeleton for enrichment analysis irrespective of the database used.

FunRich database option currently supports the enrichment analysis of the following categories

  1. Biological process
  2. Cellular component
  3. Molecular function
  4. Protein domains
  5. Site of expression (normal tissues, cancer tissues, cell types and cell lines)
  6. Biological pathways
  7. Transcription factors
  8. Clinical synopsis phenotypic terms


If you have any queries about FunRich, please

latest news

12/09/2016 - FunRich Version 3.0 released!

12/09/2016 - FunRich 3.0 released for public access here.



01/09/2016 - heatmap available in FunRich

01/09/2016 - Latest version (V3) of FunRich now also includes customizable heatmaps



25/06/2016 - ID Mapping available in FunRich

25/06/2016 - Look out for the latest version of FunRich here which now also includes mapping of multiple IDs



15/06/2015 - FunRich cited in Nature Communications!

15/06/2015 - For more information click here



30/05/2015 - Request for new features in FunRich

30/05/2015 - To request for new features in FunRich, click to request features



26/04/2015 - FunRich accepted for publication in Proteomics!

26/04/2015 - Manuscript describing FunRich is now accepted for publication in the journal Proteomics.



11/04/2015 - Extracellular vesicles plugin added to FunRich!

11/04/2015 - plugin pertaining to extracellular vesicles is now added to FunRich. Currently in beta testing.